RESEARCH / PUBLICATIONS

Research, in print.

A publication record spanning tumor classification, genomics and the microbiome.

ORCID: 0009-0007-2086-9853 ↗

41 publication entries

  1. Hoang DT, Shulman ED, Turakulov R, Abdullaev Z, Singh O, Campagnolo EM, Lalchungnunga H, Stone EA, Nasrallah MP, Ruppin E, Aldape K. Prediction of DNA methylation-based tumor types from histopathology in central nervous system tumors with deep learning. Nat Med. 2024 May 17. doi: 0.1038/s41591-024-02995-8. PMID: 38760587

    PubMed ↗

  2. Schreck KC, Strowd RE, Nabors LB, Ellingson BM, Chang M, Tan SK, Abdullaev Z, Turakulov R, Aldape K, Danda N, Desideri S, Fisher J, Iacoboni M, Surakus T, Rudek MA, Bettegowda C, Grossman SA, Ye X. Response Rate and Molecular Correlates to Encorafenib and Binimetinib in BRAF-V600E Mutant High-Grade Glioma. Clin Cancer Res. 2024 May 15;30(10):2048-2056. doi: 10.1158/1078-0432.CCR-23-3241. PMID: 38446982

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  3. Vizcaino MA, Folpe AL, Huffman H, Panchal RR, Nielsen GP, Kipp BR, Turakulov R, Aldape K, Giannini. Pseudoendocrine sarcoma: clinicopathologic, molecular, and epigenetic features of one case. C. Virchows Arch. 2023 Dec;483(6):899-904. doi: 10.1007/s00428-023-03695-3. Epub 2023 Nov 13. PMID: 37953374

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  4. Galbraith K, Serrano J, Shen G, Tran I, Slocum CC, Ketchum C, Abdullaev Z, Turakulov R, Bale T, Ladanyi M, Sukhadia P, Zaidinski M, Mullaney K, DiNapoli S, Liechty BL, Barbaro M, Allen JC, Gardner SL, Wisoff J, Harter D, Hidalgo ET, Golfinos JG, Orringer DA, Aldape K, Benhamida J, Wrzeszczynski KO, Jour G, Snuderl M. Impact of Rare and Multiple Concurrent Gene Fusions on Diagnostic DNA Methylation Classifier in Brain Tumors. Mol Cancer Res. 2024 Jan 2;22(1):21-28. doi: 10.1158/1541-7786.MCR-23-0627. PMID: 37870438

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  5. Potter S, Moritz C, Piggott MP, Bragg JG, Afonso Silva AC, Bi K, McDonald-Spicer C, Turakulov R, Eldridge MDB.Museum skins enable identification of introgression associated with cytonuclear discordance. Syst Biol. 2024 Apr 5:syae016. doi: 10.1093/sysbio/syae016. Online ahead of print. PMID: 38577768Miettinen M, Abdullaev Z, Turakulov R, Quezado M, Contreras AL, Curcio CA, Rys J, Chlopek M, Lasota J, Aldape KD. Assessment of The Utility of The Sarcoma DNA Methylation Classifier In Surgical Pathology. Am J Surg Pathol. 2024 Jan 1;48(1):112-122. doi: 10.1097/PAS.0000000000002138.

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  6. Cimino PJ, Ketchum C, Turakulov R, Singh O, Abdullaev Z, Giannini C, Pytel P, Lopez GY, Colman H, Nasrallah MP, Santi M, Fernandes IL, Nirschl J, Dahiya S, Neill S, Solomon D, Perez E, Capper D, Mani H, Caccamo D, Ball M, Badruddoja M, Chkheidze R, Camelo-Piragua S, Fullmer J, Alexandrescu S, Yeaney G, Eberhart C, Martinez-Lage M, Chen J, Zach L, Kleinschmidt-DeMasters BK, Hefti M, Lopes MB, Nuechterlein N, Horbinski C, Rodriguez FJ, Quezado M, Pratt D, Aldape K. Expanded analysis of high-grade astrocytoma with piloid features identifies an epigenetically and clinically distinct subtype associated with neurofibromatosis type 1. Acta Neuropathol. 2023 Jan;145(1):71-82. doi: 10.1007/s00401-022-02513-5. Epub 2022 Oct 22. PMID: 36271929

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  7. Wu Z, Lopes Abath Neto O, Bale TA, Benhamida J, Mata D, Turakulov R, Abdullaev Z, Marker D, Ketchum C, Chung HJ, Giannini C, Quezado M, Pratt D, Aldape K. DNA methylation analysis of glioblastomas harboring FGFR3-TACC3 fusions identifies a methylation subclass with better patient survival. Acta Neuropathol. 2022 Jul;144(1):155-157. doi: 10.1007/s00401-022-02430-7. Epub 2022 May 14. PMID: 35567606

    PubMed ↗

  8. Wu Z, Abdullaev Z, Pratt D, Chung HJ, Skarshaug S, Zgonc V, Perry C, Pack S, Saidkhodjaeva L, Nagaraj S, Tyagi M, Gangalapudi V, Valdez K, Turakulov R, Xi L, Raffeld M, Papanicolau-Sengos A, O’Donnell K, Newford M, Gilbert MR, Sahm F, Suwala AK, von Deimling A, Mamatjan Y, Karimi S, Nassiri F, Zadeh G, Ruppin E, Quezado M, Aldape K. Impact of the methylation classifier and ancillary methods on CNS tumor diagnostics. Neuro Oncol. 2022 Apr 1;24(4):571-581. doi: 10.1093/neuonc/noab227. PMID: 34555175

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  9. Pavlova A, Harrisson KA, Turakulov R, Lee YP, Ingram BA, Gilligan D, SunnucksP, Gan HM. Labile sex chromosomes in the Australian freshwater fish familyPercichthyidae. Mol Ecol Resour. 2021 Dec 4. doi: 10.1111/1755-0998.13569. Epubahead of print. PMID: 34863023.

    PubMed ↗

  10. Potter S, Bragg JG, Turakulov R, Eldridge MDB, Deakin J, Kirkpatrick M,Edwards RJ, Moritz C. Limited introgression between rock-wallabies with extensive chromosomal rearrangements. Mol Biol Evol. 2021 Dec 3:msab333. doi:10.1093/molbev/msab333 . Epub ahead of print. PMID: 34865126.

    PubMed ↗

  11. Ivan J, Moritz C, Potter S, Bragg J, Turakulov R, Hua X. Temperature predicts the rate of molecular evolution in Australian Eugongylinae skinks. Evolution.2021 Sep 5. doi: 10.1111/evo.14342. Epub ahead of print. PMID: 34486736.

    PubMed ↗

  12. Nelson MN, Jabbari JS, Turakulov R, Pradhan A, Pazos-Navarro M, Stai JS,Cannon SB, Real D. The First Genetic Map for a Psoraleoid Legume ( Bituminariabituminosa ) Reveals Highly Conserved Synteny with Phaseoloid Legumes. Plants(Basel). 2020 Jul 31;9(8):973. doi: 10.3390/plants9080973. PMID: 32752081;PMCID: PMC7463921.

    PubMed ↗

  13. Stevenson WS, Morel-Kopp MC, Chen Q, Liang HP, Bromhead CJ, Wright S,Turakulov R, Ng AP, Roberts AW, Bahlo M, Ward CM. GFI1B mutation causes ableeding disorder with abnormal platelet function. J Thromb Haemost. 2013Nov;11(11):2039-47. doi: 10.1111/jth.12368. PMID: 23927492.

    PubMed ↗

  14. Taylor D, Nagle N, Ballantyne KN, van Oorschot RA, Wilcox S, Henry J,Turakulov R, Mitchell RJ. An investigation of admixture in an AustralianAboriginal Y-chromosome STR database. Forensic Sci Int Genet. 2012Sep;6(5):532-8. doi: 10.1016/j.fsigen.2012.01.001. Epub 2012 Jan 30. PMID:22297081 .

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  15. Chistiakov DA, Chistiakova EI, Voronova NV, Turakulov RI, Savost’anov KV. Avariant of the Il2ra / Cd25 gene predisposing to graves’ disease is associatedwith increased levels of soluble interleukin-2 receptor. Scand J Immunol. 2011Nov;74(5):496-501. doi: 10.1111/j.1365-3083.2011.02608.x. PMID: 21815908.

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  16. Chistiakov DA, Voronova NV, Turakulov RI, Savost’anov KV. The -112G>Apolymorphism of the secretoglobin 3A2 (SCGB3A2) gene encoding uteroglobin-related protein 1 (UGRP1) increases risk for the development of Graves’ diseasein subsets of patients with elevated levels of immunoglobulin E. J Appl Genet.2011 May;52(2):201-7. doi: 10.1007/s13353-010-0022-0. Epub 2010 Dec 18. PMID:21170691 .

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  17. Chistiakov DA, Voronova NV, Savost’Anov KV, Turakulov RI. Loss-of-functionmutations E6 27X and I923V of IFIH1 are associated with lower poly(I:C)-inducedinterferon-β production in peripheral blood mononuclear cells of type 1 diabetespatients. Hum Immunol. 2010 Nov;71(11):1128-34. doi:10.1016/j.humimm.2010.08.005 . Epub 2010 Aug 22. PMID: 20736039.

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  18. McHale CM, Lan Q, Corso C, Li G, Zhang L, Vermeulen R, Curry JD, Shen M,Turakulov R, Higuchi R, Germer S, Yin S, Rothman N, Smith MT. Chromosometranslocations in workers exposed to benzene. J Natl Cancer Inst Monogr.2008;(39):74-7. doi: 10.1093/jncimonographs/lgn010. PMID: 18648008.

    PubMed ↗

  19. Turakulov R, Nontachaiyapoom S, Mitchelson KR, Gresshoff PM, Men AE.Ultrasensitive determination of absolute mRNA amounts at attomole levels ofnearly identical plant genes with high-throughput mass spectrometry (MassARRAY).Plant Cell Physiol. 2007 Sep;48(9):1379-84. doi: 10.1093/pcp/pcm103. Epub 2007Aug 8. PMID: 17686807.

    PubMed ↗

  20. Symons RC, Turakulov R, Foote SJ, Craig JE, McCartney PJ, Mackey DA. Nomaternally inherited diabetes and deafness mutations in a sample of 193Tasmanian diabetics with glaucoma. Ophthalmic Genet. 2007 Mar;28(1):39-41. doi:10.1080/13816810701201971 . PMID: 17454746.

    PubMed ↗

  21. Chistiakov DA, Savost’anov KV, Turakulov RI, Efremov IA, Demurov LM. Geneticanalysis and functional evaluation of the C/T(-318) and A/G(-1661) polymorphismsof the CTLA-4 gene in patients affected with Graves’ disease. Clin Immunol. 2006Feb-Mar;118(2-3):233-42. doi: 10.1016/j.clim.2005.09.017. Epub 2005 Nov 16.PMID: 16297665.

    PubMed ↗

  22. Chistiakov DA, Chernisheva A, Savost’anov KV, Turakulov RI, Kuraeva TL,Dedov II, Nosikov VV. Lack of association between genetic markers on chromosome16q22-Q24 and type 1 diabetes in Russian affected families. Croat Med J. 2005Aug;46(4):670-7. PMID: 16100772.

    PubMed ↗

  23. Chistiakov DA, Chernisheva A, Savost’anov KV, Turakulov RI, Kuraeva TL,Dedov II, Nosikov VV. The TAF5L gene on chromosome 1q42 is associated with type1 diabetes in Russian affected patients. Autoimmunity. 2005 Jun;38(4):283-93.doi: 10.1080/08916930500128594. PMID: 16206511.

    PubMed ↗

  24. Chistiakov DA, Seryogin YA, Turakulov RI, Savost’anov KV, Titovich EV,Zilberman LI, Kuraeva TL, Dedov II, Nosikov VV. Evaluation of IDDM8susceptibility locus in a Russian simplex family data set. J Autoimmun. 2005May;24(3):243-50. doi: 10.1016/j.jaut.2005.01.017. PMID: 15848047.

    PubMed ↗

  25. Ivanov PL, Zemskova EIu, Turakulov RI, Efremov IA. [Research of potentiallylinked variation of polymorphism of chromosome DNA in aspect of forensicexpertise using molecular-genetic individualizing systems CD4, vWA and vWFII].Sud Med Ekspert. 2005 Mar-Apr;48(2):29-34. Russian. PMID: 15881140.

    PubMed ↗

  26. Jorm AF, Butterworth P, Anstey KJ, Christensen H, Easteal S, Maller J,Mather KA, Turakulov RI, Wen W, Sachdev P. Memory complaints in a communitysample aged 60-64 years: associations with cognitive functioning, psychiatricsymptoms, medical conditions, APOE genotype, hippocampus and amygdala volumes,and white-matter hyperintensities. Psychol Med. 2004 Nov;34(8):1495-506. doi:10.1017/s0033291704003162 . Erratum in: Psychol Med. 2007 May;37(5):763. PMID:15724880 .

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  27. Chistiakov DA, Savost’anov KV, Turakulov RI. Screening of SNPs at 18positional candidate genes, located within the GD-1 locus on chromosome14q23-q32, for susceptibility to Graves’ disease: a TDT study. Mol Genet Metab.2004 Nov;83(3):264-70. doi: 10.1016/j.ymgme.2004.07.011. PMID: 15542398.

    PubMed ↗

  28. Chistiakov DA, Savost’anov KV, Turakulov RI, Titovich EV, Zilberman LI,Kuraeva TL, Dedov II, Nosikov VV. A new type 1 diabetes susceptibility locuscontaining the catalase gene (chromosome 11p13) in a Russian population.Diabetes Metab Res Rev. 2004 May-Jun;20(3):219-24. doi: 10.1002/dmrr.442. PMID:15133753 .

    PubMed ↗

  29. Chistiakov DA, Turakulov RI. CTLA-4 and its role in autoimmune thyroiddisease. J Mol Endocrinol. 2003 Aug;31(1):21-36. doi: 10.1677/jme.0.0310021.PMID: 12914522.

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  30. Turakulov R, Easteal S. Number of SNPS loci needed to detect populationstructure. Hum Hered. 2003;55(1):37-45. doi: 10.1159/000071808. PMID: 12890924.

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  31. Chistiakov DA, Savost’anov KV, Turakulov RI, Petunina N, Balabolkin MI,Nosikov VV. Further studies of genetic susceptibility to Graves’ disease in aRussian population. Med Sci Monit. 2002 Mar;8(3):CR180-4. PMID: 11887032.

    PubMed ↗

  32. Chistiakov DA, Savost’ianov KV, Turakulov RI, Shcherbacheva LN, Mamaeva GG,Balabolkin MI, Nosikov VV. Nukleotidnaia zamena C1167T v gene katalazy iraspolozhennye nepodaleku polimorfnye markery D11S907 i D11S2008 sviazany srazvitiem sakharnogo diabeta tipa 2 [Nucleotide substitution C1167T in thecatalase gene and position of nearby polymorphic markers DS11S907 and D11S2008are connected with development of diabetes mellitus type 2]. Mol Biol (Mosk).2000 Sep-Oct;34(5):863-7. Russian. PMID: 11033813.

    PubMed ↗

  33. Chistyakov DA, Savost’anov KV, Turakulov RI, Nosikov VV. Geneticdeterminants of Graves disease. Mol Genet Metab. 2000 Sep-Oct;71(1-2):66-9. doi:10.1006/mgme.2000.3042 . PMID: 11001797.

    PubMed ↗

  34. Chistyakov DA, Savost’anov KV, Turakulov RI, Petunina NA, Trukhina LV,Kudinova AV, Balabolkin MI, Nosikov VV. Complex association analysis of gravesdisease using a set of polymorphic markers. Mol Genet Metab. 2000Jul;70(3):214-8. doi: 10.1006/mgme.2000.3007. PMID: 10924276.

    PubMed ↗

  35. Chistiakov DA, Turakulov RI, Shcherbacheva LN, Mamaeva GG, Galabolkin MI,Nosikov VV. Analiz polimorfizma lokusa D11S2008 riadom s genom katalazy ubol’nykh gipertonieĭ i ishemicheskoĭ bolezn’iu serdtsa pri insulinnezavisimomsakharnom diabete v Moskovskoĭ populiatsii [Analysis of polymorphism of theD11S2008 locus of the catalase gene in patients with hypertension and ischemicheart disease in non-insulin-dependent diabetes mellitus in the Muscovitepopulation]. Genetika. 2000 Mar;36(3):423-6. Russian. PMID: 10779920.

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  36. Chistiakov DA, Savost’ianov KV, Turakulov RA, Petunina NA, Trukhina LV,Kudinova AV, Balabolkin MI, Nosikov VV. Polimorfizm markera D6S2414,raspolozhennogo v lokuse HLA (6p21.31), i geneticheskaia predraspolozhennost’ kbolezni Greĭvsa v moskovskoĭ populatsii [Polymorphism of D6S2414 marker locatedin HLA (6p21.31) locus and genetic predisposition to Grave’s disease in Moscowpopulation]. Mol Biol (Mosk). 2000 Jan-Feb;34(1):24-7. Russian. PMID: 10732335.

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  37. Chistiakov DA, Turakulov RI, Moiseev VS, Nosikov VV. Polimorfizm T174M genaangiotenzinogena i serdechno-sosudistye bolezni v Moskovskoĭ populiatsii[Polymorphism of angiotensinogen T174M gene and cardiovascular diseases in theMoscow population]. Genetika. 1999 Aug;35(8):1160-4. Russian. PMID: 10546120.

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  38. Chistiakov DA, Turakulov RI. Geneticheskie markery gipertonicheskoĭ bolezni[Genetic markers of hypertension]. Genetika. 1999 May;35(5):565-73. Russian.PMID: 10495944.

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  39. Chistiakov DA, Turakulov RI, Kondrat’ev IaIu, Shestakova MV, Nosikov VV,Dedov II, Debabov VG. Polimorfizm gena angiotenzinogena i geneticheskaiapredraspolozhennost’ k diabeticheskoĭ nefropatii pri sakharnom diabete tipa 1[Polymorphism of the angiotensinogen gene and genetic predisposition to diabeticnephropathy in type I diabetes mellitus]. Mol Biol (Mosk). 1999 Mar-Apr;33(2):211-3. Russian. PMID: 10377565.

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  40. Chistiakov DA, Turakulov RI, Girashko NM, Demurov LM, Rachiba IuM,Kondrat’ev IaIu, Milen’kaia TM, Shestakova MV, Dedov II, Nosikov VV.Issledovanie polimorfizma dinukleotidnogo povtora vnutri gena al’dozoreduktazy vnorme i sredi bol’nykh insulin-zavisimym sakharnym diabetom s sosudistymioslozhneniiami [Polymorphism of the dinucleotide repeat inside the aldosereductase gene in normal states and in patients with insulin-dependent diabetesmellitus with vascular complications]. Mol Biol (Mosk). 1997 Sep-Oct;31(5):778-83. Russian. PMID: 9454059.

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  41. Turakulov RI, Chistiakov DA, Odinokova ON, Nosikov VV. Allel’nyĭ polimorfizmkorotkikh tandemno povtoriaiushchikhsia posledovatel’nosteĭ lokusov HUMF13A01 iHUMCD4v Russkikh populiatsiiakh Moskvy i Tomska [Allelic polymorphism of short tandemly repeating sequences of the HUMF13A01 and HUMCD4 loci in Russianpopulations from Moscow and Tomsk]. Genetika. 1997 Jul;33(7):979-85. Russian.PMID: 9378293.

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